On the Equivalence of Schemes for Simulating Bilayers at Constant Surface Tension.

نویسندگان

  • Jocelyn M Rodgers
  • Berend Smit
چکیده

Lipid bilayers are simulated using flexible simulation cells in order to allow for relaxations in area per lipid as bilayer content and temperature are varied. We develop a suite of Monte Carlo (MC) moves designed to generate constant surface tension γ and constant pressure P and find that the NPT partition function proposed by Attard [J. Chem. Phys.1995, 103, 9884-9885] leads to an NPγT partition function with a form invariant to choice of independent shape variables. We then compare this suite of MC moves to NPγT MC moves previously employed in our group as well as a pair of MC moves designed to replicate the NP∥P⊥T "ensemble" often used in molecular dynamics simulations to yield zero surface tension and constant pressure. A detailed analysis of shape fluctuations in a small bilayer system reveals that the two latter MC move sets are different from one another as well as from our new suite of MC moves, as justified by careful analysis of the partition functions. However, the study of a larger bilayer system reveals that, for practical purposes for this system, all six MC move sets are comparable to one another.

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Constant surface tension simulations of lipid bilayers: The sensitivity of surface areas and compressibilities

Eight molecular dynamics simulations of a hydrated lipid bilayer have been carried out differing only in the applied surface tension, g, defining the boundary conditions of the periodic cell. The calculated surface area per molecule and deuterium order parameter profile are found to depend strongly on g. We present several methods to calculate the area compressibility modulus, KA , from the sim...

متن کامل

Phase behavior of lipid bilayers under tension.

Given the proposed importance of membrane tension in regulating cellular functions, we explore the effects of a finite surface tension on phase equilibrium using a molecular theory that captures the quantitative structure of the phase diagram of the tensionless DPPC/DOPC/Cholesterol lipid bilayer. We find that an increase in the surface tension decreases the temperature of the transition from l...

متن کامل

Computer simulation of liquid/liquid interfaces. II. Surface tension-area dependence of a bilayer and monolayer

A constant normal pressure-surface tension algorithm for molecular dynamics simulation, developed in the preceding paper, was used to laterally expand and compress the surface area of a dipalmitoylphosphatidylcholine ~DPPC! lipid bilayer. Then, from simulations carried out at constant normal pressure and surface area, values of the surface tension and other thermodynamic variables such as the i...

متن کامل

Stabilisation of Wet Protein Foams Using Starch Nano-Particles

Protein isolate is used in the food industry in order to process and stabilise food foams. Thereforethere has been a great deal of interest and research in order to understand the effect of processingparameters on the functional properties of the isolate. The major purpose of this research is to studythe foamability of the different proteins - starch nano-particle system. The results from exper...

متن کامل

Substructure Model for Concrete Behavior Simulation under Cyclic Multiaxial Loading

This paper proposes a framework for the constitutive model based on the semi-micromechanical aspects of plasticity, including damage progress for simulating behavior of concrete under multiaxial loading. This model is aimed to be used in plastic and fracture analysis of both regular and reinforced concrete structures, for the framework of sample plane crack approach. This model uses multilamina...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

عنوان ژورنال:
  • Journal of chemical theory and computation

دوره 8 2  شماره 

صفحات  -

تاریخ انتشار 2012